PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09969g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 194aa    MW: 20483.8 Da    PI: 5.1978
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09969g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP83.84.2e-261742489
                       TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......k 89
                              +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s ++s+ +ss +       +
  Niben101Scf09969g00001.1  1 MPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStLSVSLRNSSVSSSVSapldyksS 74
                              9**********************************************888644444433332222233433220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.645139IPR017887Transcription factor TCP subgroup
PfamPF036346.7E-23180IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPIVCAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTIPASFS TLSVSLRNSS  60
VSSSVSAPLD YKSSSQPSIS PAPFLLGKRL RHEDDDGSGE KDDASNGATF VGPTPGFWAV  120
AARPDFGQVW SFAPPPPQEM VAPTPSSAAR FLQQQMGEES AARLGNYFPI AQGHLNLLAS  180
LSGPSSGRRD DDGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760508.11e-104PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX23e-65TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV42e-90G3BGV4_SOLLC; TCP transcription factor 14
TrEMBLK4BP742e-90K4BP74_SOLLC; Uncharacterized protein
TrEMBLM1BCL71e-90M1BCL7_SOLTU; Uncharacterized protein
STRINGSolyc04g009180.1.17e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-58TCP family protein